IL_6GSK_072

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_072 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1332

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6GSK|1|14|U|293
6GSK|1|14|A|294
6GSK|1|14|G|295
*
6GSK|1|14|C|343
6GSK|1|14|G|344
6GSK|1|14|A|345
6GSK|1|14|A|346
6GSK|1|14|A|347

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L24