IL_6GSK_116

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_116 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0683

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6GSK|1|14|G|1651
6GSK|1|14|A|1652
6GSK|1|14|G|1653
6GSK|1|14|A|1654
6GSK|1|14|A|1655
6GSK|1|14|C|1656
*
6GSK|1|14|G|2004
6GSK|1|14|A|2005
6GSK|1|14|C|2006

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17