IL_6GSK_122

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6GSK|1|14|G|1801, 6GSK|1|14|G|1816, 6GSK|1|14|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_122 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0605

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GSK|1|14|U|1798
6GSK|1|14|G|1799
6GSK|1|14|C|1800
6GSK|1|14|G|1801
6GSK|1|14|A|1802
6GSK|1|14|A|1803
6GSK|1|14|C|1804
*
6GSK|1|14|G|1813
6GSK|1|14|G|1814
6GSK|1|14|A|1815
6GSK|1|14|G|1816
6GSK|1|14|G|1817
6GSK|1|14|U|1818
6GSK|1|14|A|1819
6GSK|1|14|U|1820
6GSK|1|14|A|1821

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA