IL_6GSK_136

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_136 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3866

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GSK|1|14|G|2106
6GSK|1|14|C|2107
6GSK|1|14|C|2108
6GSK|1|14|U|2109
6GSK|1|14|G|2110
*
6GSK|1|14|C|2179
6GSK|1|14|U|2180
6GSK|1|14|G|2181
6GSK|1|14|G|2182
6GSK|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains