IL_6GSK_157

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

6GSK|1|14|C|2798, 6GSK|1|14|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|14|C|2789
6GSK|1|14|A|2790
6GSK|1|14|C|2791
6GSK|1|14|G|2792
6GSK|1|14|G|2793
6GSK|1|14|C|2794
6GSK|1|14|G|2795
6GSK|1|14|U|2797
6GSK|1|14|C|2798
6GSK|1|14|A|2799
6GSK|1|14|A|2801
6GSK|1|14|G|2802
6GSK|1|14|C|2803
6GSK|1|14|C|2804
6GSK|1|14|G|2805
6GSK|1|14|G|2807
6GSK|1|14|U|2808
6GSK|1|14|A|2809
6GSK|1|14|A|2810
6GSK|1|14|G|2811
*
6GSK|1|14|C|2889
6GSK|1|14|G|2891
6GSK|1|14|A|2892
6GSK|1|14|G|2893
6GSK|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain A5

50S ribosomal protein L22