IL_6GSK_192

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_192 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.1482

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6GSK|1|1G|G|654
6GSK|1|1G|A|655
*
6GSK|1|1G|U|751
6GSK|1|1G|G|752
6GSK|1|1G|A|753
6GSK|1|1G|C|754

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 6A

30S ribosomal protein S15

Chain 72

30S ribosomal protein S8