IL_6GSK_226

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_226 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0637

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSK|1|1H|G|24
6GSK|1|1H|U|25
6GSK|1|1H|G|26
6GSK|1|1H|G|27
6GSK|1|1H|A|28
6GSK|1|1H|U|29
6GSK|1|1H|G|30
*
6GSK|1|1H|C|510
6GSK|1|1H|U|511
6GSK|1|1H|G|512
6GSK|1|1H|A|513
6GSK|1|1H|A|514
6GSK|1|1H|A|515
6GSK|1|1H|C|516

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32