IL_6GSK_248
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6GSK|1|1H|G|776, 6GSK|1|1H|A|788, 6GSK|1|1H|A|789, 6GSK|1|1H|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_248 not in the Motif Atlas
- Geometric match to IL_7A0S_021
- Geometric discrepancy: 0.1151
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GSK|1|1H|G|775
6GSK|1|1H|G|776
6GSK|1|1H|A|777
*
6GSK|1|1H|U|787
6GSK|1|1H|A|788
6GSK|1|1H|A|789
6GSK|1|1H|C|790
6GSK|1|1H|C|791
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 31
- 50S ribosomal protein L4
- Chain E8
- 50S ribosomal protein L22
- Chain P8
- 50S ribosomal protein L34
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