IL_6GSK_250

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6GSK|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_250 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3045

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6GSK|1|1H|C|844
6GSK|1|1H|G|845
6GSK|1|1H|C|846
*
6GSK|1|1H|G|931
6GSK|1|1H|G|932
6GSK|1|1H|A|933
6GSK|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30