IL_6GSK_260

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6GSK|1|1H|U|1142, 6GSK|1|1H|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_260 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1206

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6GSK|1|1H|C|1018
6GSK|1|1H|U|1019
6GSK|1|1H|A|1020
6GSK|1|1H|A|1021
6GSK|1|1H|G|1022
6GSK|1|1H|U|1023
6GSK|1|1H|G|1024
*
6GSK|1|1H|C|1140
6GSK|1|1H|U|1141
6GSK|1|1H|U|1142
6GSK|1|1H|A|1142|||A
6GSK|1|1H|A|1143
6GSK|1|1H|G|1144

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13