IL_6GSK_288

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6GSK|1|1H|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_288 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1085

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GSK|1|1H|C|1686
6GSK|1|1H|G|1687
6GSK|1|1H|U|1688
6GSK|1|1H|A|1689
6GSK|1|1H|A|1690
6GSK|1|1H|C|1691
*
6GSK|1|1H|G|1696
6GSK|1|1H|G|1697
6GSK|1|1H|A|1698
6GSK|1|1H|G|1699
6GSK|1|1H|A|1700
6GSK|1|1H|A|1701
6GSK|1|1H|G|1702

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA