IL_6GSK_306

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6GSK|1|1H|C|2111, 6GSK|1|1H|G|2112, 6GSK|1|1H|U|2113, 6GSK|1|1H|A|2117, 6GSK|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_306 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2329

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GSK|1|1H|G|2110
6GSK|1|1H|C|2111
6GSK|1|1H|G|2112
6GSK|1|1H|U|2113
6GSK|1|1H|A|2114
6GSK|1|1H|G|2115
6GSK|1|1H|G|2116
6GSK|1|1H|A|2117
6GSK|1|1H|U|2118
6GSK|1|1H|A|2119
6GSK|1|1H|G|2120
*
6GSK|1|1H|C|2178
6GSK|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA