IL_6GSK_311
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- UCC*GG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_311 not in the Motif Atlas
- Homologous match to IL_7RQB_090
- Geometric discrepancy: 0.2299
- The information below is about IL_7RQB_090
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_27635.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 38
Unit IDs
6GSK|1|1H|U|2401
6GSK|1|1H|C|2402
6GSK|1|1H|C|2403
*
6GSK|1|1H|G|2414
6GSK|1|1H|G|2415
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 78
- 50S ribosomal protein L15
- Chain J8
- 50S ribosomal protein L28
- Chain Q8
- 50S ribosomal protein L35
Coloring options: