IL_6GSK_326

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6GSK|1|1H|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_326 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.0734

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GSK|1|1H|C|2695
6GSK|1|1H|U|2696
*
6GSK|1|1H|A|2711
6GSK|1|1H|U|2712
6GSK|1|1H|A|2712|||A
6GSK|1|1H|A|2713
6GSK|1|1H|G|2714

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19