IL_6GSK_364

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

6GSK|1|1G|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_364 not in the Motif Atlas

Geometric match to IL_8C3A_008

Geometric discrepancy: 0.2978

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GSK|1|1G|U|952
6GSK|1|1G|G|953
6GSK|1|1G|G|954
*
6GSK|1|1G|C|1226
6GSK|1|1G|A|1227
6GSK|1|1G|C|1228
6GSK|1|1G|A|1229

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13