IL_6GSK_366
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CCGUC*GUCUGG
- Length
- 11 nucleotides
- Bulged bases
- 6GSK|1|1G|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_366 not in the Motif Atlas
- Geometric match to IL_8S95_002
- Geometric discrepancy: 0.3373
- The information below is about IL_8S95_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6GSK|1|1G|C|1059
6GSK|1|1G|C|1060
6GSK|1|1G|G|1061
6GSK|1|1G|U|1062
6GSK|1|1G|C|1063
*
6GSK|1|1G|G|1193
6GSK|1|1G|U|1194
6GSK|1|1G|C|1195
6GSK|1|1G|U|1196
6GSK|1|1G|G|1197
6GSK|1|1G|G|1198
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 22
- 30S ribosomal protein S3
- Chain 42
- 30S ribosomal protein S5
- Chain 4L
- mRNA
- Chain 5A
- 30S ribosomal protein S14 type Z
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