IL_6GSK_368

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

6GSK|1|1G|C|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_368 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4875

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GSK|1|1G|G|1258
6GSK|1|1G|C|1259
6GSK|1|1G|C|1260
6GSK|1|1G|A|1261
6GSK|1|1G|C|1262
*
6GSK|1|1G|G|1273
6GSK|1|1G|G|1274
6GSK|1|1G|A|1275
6GSK|1|1G|G|1276
6GSK|1|1G|C|1277

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z