IL_6GSK_375

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_375 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0627

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6GSK|1|1H|G|1666
6GSK|1|1H|G|1667
6GSK|1|1H|A|1668
6GSK|1|1H|A|1669
6GSK|1|1H|C|1670
6GSK|1|1H|U|1671
6GSK|1|1H|C|1672
6GSK|1|1H|U|1673
6GSK|1|1H|G|1674
*
6GSK|1|1H|C|1990
6GSK|1|1H|U|1991
6GSK|1|1H|G|1992
6GSK|1|1H|U|1993
6GSK|1|1H|C|1994

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14