IL_6GSK_377

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUGGGAGC*GCGCCGGUGAAAUACCAC

Length

26 nucleotides

Bulged bases

6GSK|1|1H|A|2126, 6GSK|1|1H|C|2161, 6GSK|1|1H|U|2167, 6GSK|1|1H|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|1H|G|2121
6GSK|1|1H|U|2122
6GSK|1|1H|G|2123
6GSK|1|1H|G|2124
6GSK|1|1H|G|2125
6GSK|1|1H|A|2126
6GSK|1|1H|G|2127
6GSK|1|1H|C|2128
*
6GSK|1|1H|G|2160
6GSK|1|1H|C|2161
6GSK|1|1H|G|2162
6GSK|1|1H|C|2163
6GSK|1|1H|C|2164
6GSK|1|1H|G|2165
6GSK|1|1H|G|2166
6GSK|1|1H|U|2167
6GSK|1|1H|G|2168
6GSK|1|1H|A|2169
6GSK|1|1H|A|2170
6GSK|1|1H|A|2171
6GSK|1|1H|U|2172
6GSK|1|1H|A|2173
6GSK|1|1H|C|2174
6GSK|1|1H|C|2175
6GSK|1|1H|A|2176
6GSK|1|1H|C|2177

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA