IL_6GSK_388

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGUC*GUCUG

Length

9 nucleotides

Bulged bases

6GSK|1|1G|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_388 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2715

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GSK|1|1G|C|1060
6GSK|1|1G|G|1061
6GSK|1|1G|U|1062
6GSK|1|1G|C|1063
*
6GSK|1|1G|G|1193
6GSK|1|1G|U|1194
6GSK|1|1G|C|1195
6GSK|1|1G|U|1196
6GSK|1|1G|G|1197

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1L

Transfer RNA; tRNA

Chain 22

30S ribosomal protein S3

Chain 42

30S ribosomal protein S5

Chain 4L

mRNA

Chain 5A

30S ribosomal protein S14 type Z