IL_6GSL_101

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

6GSL|1|14|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_101 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.2459

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GSL|1|14|C|1202
6GSL|1|14|G|1203
6GSL|1|14|A|1204
6GSL|1|14|U|1205
6GSL|1|14|G|1206
*
6GSL|1|14|U|1240
6GSL|1|14|A|1241
6GSL|1|14|A|1242
6GSL|1|14|G|1243

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4