IL_6GSL_139

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_139 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3803

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GSL|1|14|G|2106
6GSL|1|14|C|2107
6GSL|1|14|C|2108
6GSL|1|14|U|2109
6GSL|1|14|G|2110
*
6GSL|1|14|C|2179
6GSL|1|14|U|2180
6GSL|1|14|G|2181
6GSL|1|14|G|2182
6GSL|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1