IL_6GSL_140

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCUAGGAUAG*CC

Length

12 nucleotides

Bulged bases

6GSL|1|14|C|2111, 6GSL|1|14|U|2113, 6GSL|1|14|A|2114

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_140 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.38

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GSL|1|14|G|2110
6GSL|1|14|C|2111
6GSL|1|14|U|2113
6GSL|1|14|A|2114
6GSL|1|14|G|2115
6GSL|1|14|G|2116
6GSL|1|14|A|2117
6GSL|1|14|U|2118
6GSL|1|14|A|2119
6GSL|1|14|G|2120
*
6GSL|1|14|C|2178
6GSL|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1