IL_6GSL_149

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_149 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1924

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6GSL|1|14|A|2459
6GSL|1|14|U|2460
6GSL|1|14|C|2461
*
6GSL|1|14|G|2489
6GSL|1|14|G|2490
6GSL|1|14|U|2491
6GSL|1|14|U|2492
6GSL|1|14|U|2493

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16