IL_6GSL_152

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6GSL|1|14|G|2576, 6GSL|1|14|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_152 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0886

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6GSL|1|14|C|2510
6GSL|1|14|U|2511
6GSL|1|14|C|2512
*
6GSL|1|14|G|2574
6GSL|1|14|C|2575
6GSL|1|14|G|2576
6GSL|1|14|A|2577
6GSL|1|14|G|2578

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain J5

50S ribosomal protein L32