IL_6GSL_246

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GSL|1|1H|G|801, 6GSL|1|1H|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_246 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0917

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|1H|G|674
6GSL|1|1H|A|675
6GSL|1|1H|A|676
6GSL|1|1H|A|677
6GSL|1|1H|C|678
*
6GSL|1|1H|G|799
6GSL|1|1H|A|800
6GSL|1|1H|G|801
6GSL|1|1H|A|802
6GSL|1|1H|U|803
6GSL|1|1H|A|804
6GSL|1|1H|G|805
6GSL|1|1H|C|806

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15