IL_6GSL_251

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

6GSL|1|1H|G|776, 6GSL|1|1H|A|788, 6GSL|1|1H|A|789, 6GSL|1|1H|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_251 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0703

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|1H|G|775
6GSL|1|1H|G|776
6GSL|1|1H|A|777
*
6GSL|1|1H|U|787
6GSL|1|1H|A|788
6GSL|1|1H|A|789
6GSL|1|1H|C|790
6GSL|1|1H|C|791

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 31

50S ribosomal protein L4

Chain E8

50S ribosomal protein L22

Chain P8

50S ribosomal protein L34