IL_6GSL_255
3D structure
- PDB id
- 6GSL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSL_255 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1379
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GSL|1|1H|C|857
6GSL|1|1H|U|858
6GSL|1|1H|G|859
6GSL|1|1H|U|860
6GSL|1|1H|A|861
6GSL|1|1H|G|862
*
6GSL|1|1H|C|915
6GSL|1|1H|G|916
6GSL|1|1H|A|917
6GSL|1|1H|A|918
6GSL|1|1H|G|919
6GSL|1|1H|G|920
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain I8
- 50S ribosomal protein L27
- Chain L8
- 50S ribosomal protein L30
Coloring options: