IL_6GSL_268

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_268 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1165

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GSL|1|1H|C|1041
6GSL|1|1H|G|1042
6GSL|1|1H|C|1043
*
6GSL|1|1H|G|1112
6GSL|1|1H|U|1113
6GSL|1|1H|G|1114

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 38

50S ribosomal protein L10

Chain 51

50S ribosomal protein L6

Chain H8

50S ribosomal protein L25