IL_6GSL_270

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6GSL|1|1H|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_270 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.3319

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSL|1|1H|G|1087
6GSL|1|1H|A|1088
6GSL|1|1H|G|1089
6GSL|1|1H|U|1090
6GSL|1|1H|G|1091
*
6GSL|1|1H|C|1100
6GSL|1|1H|U|1101
6GSL|1|1H|C|1102

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 48

50S ribosomal protein L11