IL_6GSL_296

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6GSL|1|1H|G|1801, 6GSL|1|1H|G|1816, 6GSL|1|1H|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSL_296 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.055

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GSL|1|1H|U|1798
6GSL|1|1H|G|1799
6GSL|1|1H|C|1800
6GSL|1|1H|G|1801
6GSL|1|1H|A|1802
6GSL|1|1H|A|1803
6GSL|1|1H|C|1804
*
6GSL|1|1H|G|1813
6GSL|1|1H|G|1814
6GSL|1|1H|A|1815
6GSL|1|1H|G|1816
6GSL|1|1H|G|1817
6GSL|1|1H|U|1818
6GSL|1|1H|A|1819
6GSL|1|1H|U|1820
6GSL|1|1H|A|1821

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA