IL_6GSL_371

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUGGGAGCCUGUGAACC*GGGGAGGCGCCGGUGAAAUACCAC

Length

41 nucleotides

Bulged bases

6GSL|1|1H|A|2126, 6GSL|1|1H|U|2132, 6GSL|1|1H|C|2161, 6GSL|1|1H|G|2166, 6GSL|1|1H|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSL|1|1H|G|2121
6GSL|1|1H|U|2122
6GSL|1|1H|G|2123
6GSL|1|1H|G|2124
6GSL|1|1H|G|2125
6GSL|1|1H|A|2126
6GSL|1|1H|G|2127
6GSL|1|1H|C|2128
6GSL|1|1H|C|2129
6GSL|1|1H|U|2130
6GSL|1|1H|G|2131
6GSL|1|1H|U|2132
6GSL|1|1H|G|2133
6GSL|1|1H|A|2134
6GSL|1|1H|A|2135
6GSL|1|1H|C|2136
6GSL|1|1H|C|2137
*
6GSL|1|1H|G|2154
6GSL|1|1H|G|2155
6GSL|1|1H|G|2156
6GSL|1|1H|G|2157
6GSL|1|1H|A|2158
6GSL|1|1H|G|2159
6GSL|1|1H|G|2160
6GSL|1|1H|C|2161
6GSL|1|1H|G|2162
6GSL|1|1H|C|2163
6GSL|1|1H|C|2164
6GSL|1|1H|G|2165
6GSL|1|1H|G|2166
6GSL|1|1H|U|2167
6GSL|1|1H|G|2168
6GSL|1|1H|A|2169
6GSL|1|1H|A|2170
6GSL|1|1H|A|2171
6GSL|1|1H|U|2172
6GSL|1|1H|A|2173
6GSL|1|1H|C|2174
6GSL|1|1H|C|2175
6GSL|1|1H|A|2176
6GSL|1|1H|C|2177

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1