IL_6GSM_011

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UUAUUUG*CAUUCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|U|117
6GSM|1|2|U|118
6GSM|1|2|A|119
6GSM|1|2|U|120
6GSM|1|2|U|121
6GSM|1|2|U|122
6GSM|1|2|G|123
*
6GSM|1|2|C|293
6GSM|1|2|A|294
6GSM|1|2|U|295
6GSM|1|2|U|296
6GSM|1|2|C|297
6GSM|1|2|A|298

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8