IL_6GSM_030

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGAGGGCAAG*CUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|G|547
6GSM|1|2|G|548
6GSM|1|2|A|549
6GSM|1|2|G|550
6GSM|1|2|G|551
6GSM|1|2|G|552
6GSM|1|2|C|553
6GSM|1|2|A|554
6GSM|1|2|A|555
6GSM|1|2|G|556
*
6GSM|1|2|C|586
6GSM|1|2|U|587
6GSM|1|2|C|588
6GSM|1|2|C|589

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

KLLA0F09812p

Chain J

KLLA0E23673p

Chain X

RPS23

Chain e

40S ribosomal protein S30