IL_6GSM_031

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6GSM|1|2|U|557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_031 not in the Motif Atlas

Geometric match to IL_4WF9_080

Geometric discrepancy: 0.3521

The information below is about IL_4WF9_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6GSM|1|2|G|556
6GSM|1|2|U|557
6GSM|1|2|C|558
*
6GSM|1|2|G|585
6GSM|1|2|C|586

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30