IL_6GSM_040

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

6GSM|1|2|U|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_040 not in the Motif Atlas

Homologous match to IL_4V88_426

Geometric discrepancy: 0.214

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GSM|1|2|G|818
6GSM|1|2|U|819
6GSM|1|2|U|820
6GSM|1|2|U|821
*
6GSM|1|2|A|849
6GSM|1|2|U|850
6GSM|1|2|C|851

Current chains

Chain 2

18S ribosomal RNA

Nearby chains