IL_6GSM_041

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6GSM|1|2|U|958

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_041 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.15

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GSM|1|2|G|866
6GSM|1|2|G|867
6GSM|1|2|A|868
6GSM|1|2|C|869
*
6GSM|1|2|G|956
6GSM|1|2|U|957
6GSM|1|2|U|958
6GSM|1|2|U|959
6GSM|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

KLLA0F18040p

Chain W

40S ribosomal protein S22

Chain b

40S ribosomal protein S27