IL_6GSM_047

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGGAUCGAAG*CGUAGUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|G|984
6GSM|1|2|G|985
6GSM|1|2|G|986
6GSM|1|2|A|987
6GSM|1|2|U|988
6GSM|1|2|C|989
6GSM|1|2|G|990
6GSM|1|2|A|991
6GSM|1|2|A|992
6GSM|1|2|G|993
*
6GSM|1|2|C|1009
6GSM|1|2|G|1010
6GSM|1|2|U|1011
6GSM|1|2|A|1012
6GSM|1|2|G|1013
6GSM|1|2|U|1014
6GSM|1|2|C|1015

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26

Chain m

Eukaryotic translation initiation factor eIF-1

Chain p

Eukaryotic translation initiation factor 3 subunit B