IL_6GSM_052

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6GSM|1|2|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_052 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3199

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GSM|1|2|G|1145
6GSM|1|2|A|1146
6GSM|1|2|C|1147
*
6GSM|1|2|G|1627
6GSM|1|2|U|1628
6GSM|1|2|A|1629
6GSM|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

KLLA0F09812p

Chain a

40S ribosomal protein S26

Chain h

eL41