IL_6GSM_064

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UUA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_064 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.2051

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GSM|1|2|U|1333
6GSM|1|2|U|1334
6GSM|1|2|A|1335
*
6GSM|1|2|U|1413
6GSM|1|2|G|1414
6GSM|1|2|A|1415

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain R

KLLA0B01474p

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29