IL_6GSM_066

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

AAUAGGG*CUCUUCU

Length

14 nucleotides

Bulged bases

6GSM|1|2|A|1345, 6GSM|1|2|U|1346, 6GSM|1|2|U|1376

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|A|1344
6GSM|1|2|A|1345
6GSM|1|2|U|1346
6GSM|1|2|A|1347
6GSM|1|2|G|1348
6GSM|1|2|G|1349
6GSM|1|2|G|1350
*
6GSM|1|2|C|1372
6GSM|1|2|U|1373
6GSM|1|2|C|1374
6GSM|1|2|U|1375
6GSM|1|2|U|1376
6GSM|1|2|C|1377
6GSM|1|2|U|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain Q

40S ribosomal protein S16

Chain U

KLLA0F25542p

Chain g

KLLA0E12277p