IL_6GSM_072

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_072 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.2807

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSM|1|2|G|1538
6GSM|1|2|G|1539
6GSM|1|2|G|1540
6GSM|1|2|A|1541
6GSM|1|2|U|1542
6GSM|1|2|A|1543
*
6GSM|1|2|U|1564
6GSM|1|2|U|1565
6GSM|1|2|C|1566
6GSM|1|2|A|1567
6GSM|1|2|A|1568
6GSM|1|2|C|1569

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p