IL_6GSM_088

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

UUUGAAAAAAU*AUUAGCAUG

Length

20 nucleotides

Bulged bases

6GSM|1|2|U|793, 6GSM|1|2|U|794

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|U|748
6GSM|1|2|U|749
6GSM|1|2|U|750
6GSM|1|2|G|751
6GSM|1|2|A|752
6GSM|1|2|A|753
6GSM|1|2|A|754
6GSM|1|2|A|755
6GSM|1|2|A|756
6GSM|1|2|A|757
6GSM|1|2|U|758
*
6GSM|1|2|A|792
6GSM|1|2|U|793
6GSM|1|2|U|794
6GSM|1|2|A|795
6GSM|1|2|G|796
6GSM|1|2|C|797
6GSM|1|2|A|798
6GSM|1|2|U|799
6GSM|1|2|G|800

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain H

40S ribosomal protein S7

Chain J

KLLA0E23673p

Chain L

KLLA0A10483p

Chain W

40S ribosomal protein S22