IL_6GSM_101
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_101 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.3113
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.2
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSM|1|2|U|117
6GSM|1|2|U|118
6GSM|1|2|A|119
6GSM|1|2|U|120
6GSM|1|2|U|121
6GSM|1|2|U|122
*
6GSM|1|2|A|294
6GSM|1|2|U|295
6GSM|1|2|U|296
6GSM|1|2|C|297
6GSM|1|2|A|298
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S8
Coloring options: