IL_6GSM_104

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_104 not in the Motif Atlas

Homologous match to IL_8P9A_389

Geometric discrepancy: 0.4332

The information below is about IL_8P9A_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.6

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

6GSM|1|2|C|269
6GSM|1|2|A|270
6GSM|1|2|U|271
6GSM|1|2|G|272
*
6GSM|1|2|U|282
6GSM|1|2|G|283
6GSM|1|2|G|284

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6