IL_6GSN_011

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UCGUU*AA

Length

7 nucleotides

Bulged bases

6GSN|1|2|C|114, 6GSN|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_011 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.3229

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6GSN|1|2|U|113
6GSN|1|2|C|114
6GSN|1|2|G|115
6GSN|1|2|U|116
6GSN|1|2|U|117
*
6GSN|1|2|A|298
6GSN|1|2|A|299

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p