IL_6GSN_024

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6GSN|1|2|U|319, 6GSN|1|2|C|320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_024 not in the Motif Atlas

Geometric match to IL_4ERD_001

Geometric discrepancy: 0.3515

The information below is about IL_4ERD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GSN|1|2|U|317
6GSN|1|2|U|318
6GSN|1|2|U|319
6GSN|1|2|C|320
6GSN|1|2|G|321
6GSN|1|2|A|322
*
6GSN|1|2|U|344
6GSN|1|2|G|345

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain q

Eukaryotic translation initiation factor 3 subunit C