IL_6GSN_030

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

6GSN|1|2|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|G|479
6GSN|1|2|A|480
6GSN|1|2|U|481
6GSN|1|2|A|482
6GSN|1|2|C|483
*
6GSN|1|2|G|502
6GSN|1|2|U|503
6GSN|1|2|A|504
6GSN|1|2|A|505
6GSN|1|2|U|506
6GSN|1|2|U|507

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30