IL_6GSN_032

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGAGGGCAAG*CUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|G|547
6GSN|1|2|G|548
6GSN|1|2|A|549
6GSN|1|2|G|550
6GSN|1|2|G|551
6GSN|1|2|G|552
6GSN|1|2|C|553
6GSN|1|2|A|554
6GSN|1|2|A|555
6GSN|1|2|G|556
*
6GSN|1|2|C|586
6GSN|1|2|U|587
6GSN|1|2|C|588
6GSN|1|2|C|589

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain C

KLLA0F09812p

Chain J

KLLA0E23673p

Chain X

RPS23

Chain e

40S ribosomal protein S30