IL_6GSN_033

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6GSN|1|2|U|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_033 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.2827

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6GSN|1|2|G|556
6GSN|1|2|U|557
6GSN|1|2|C|558
*
6GSN|1|2|G|585
6GSN|1|2|C|586

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain D

KLLA0D08305p

Chain X

RPS23

Chain e

40S ribosomal protein S30